Hi thanks for replying,
Today I contacted the Lens & PTZ manufacturer and I think I understand how to do this now.
If you look at the schematic for the lens you'll see that it has 4 wires for the focus and zoom functions. The PTZ device has 3 connections for Zoom, Focus, and Common. The Computar rep told me to connect the black focus wire and the red zoom wire from the lens together with the common connection on the PTZ device, the green focus wire of the lens to the focus connection on the PTZ device, and the yellow zoom wire from the lens to zoom connection on the PTZ device.
As far as the rest of the connections go-
The 4 pin auto iris plug from the lens will connect into the 4 pin female plug on the camera.
The Camera's RJ45 will connect to a switch on my LAN
The Camera's RS485 ports will connect with the PTZ's RS485 ports.
So after all this I expect to control all the functions of the camera, lens, and PTZ through the camera's PC software. It sounds like it'll work to me but I'll have to wait and see since the equipment hasn't arrived yet.
If anyone thinks I could be wrong in my wiring please chime in.